| Command | Flags |
| ------- | ----- |
| `link add` | --type |
| `link rm` | --type |
| `link list` | --direction, --type |
| `link backlinks` | — |
| `coll create` | — |
| `coll add` | — |
| `coll list` | — |
| `view save` | — |
| `view list` | — |
| `view exec` | — |
| `state set` | — |
| `state transitions-add` | — |
| `state log` | — |
| `task scan` | — |
| `task list` | --due-today |
| `remind set` | — |
| `annotate add` | --range, --highlight |
| `annotate list` | — |
| `version diff` | — |
| `event add` | — |
| `event timeline` | — |
| `backup run` | --dir, --prune, --verify, --file |
| `watch start` | --debounce-ms |
| `watch status` | — |
| `watch stop` | — |