test(cli): fix typer argument parsing and scratchpad pollution

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- Fixes `src/tests/test_cli_agent_mode.py` tests failing randomly when generated IDs start with a hyphen (`-`) by using `--` separator to prevent typer from misinterpreting them as options.
- Removes leftover temporary `.py` and `.md` scratchpad files that were mistakenly included in the previous commit attempt.

Co-authored-by: PR0M3TH3AN <[email protected]>

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google-labs-jules[bot]andPR0M3TH3AN committed 2026-03-01 23:40:38 +00:00

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src/context/run.md

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				`Baseline reads completed by content-audit-agent.`