chore: Enforce Clean Repo Standard and organize artifacts

- Added "Clean Repo Standard" to `AGENTS.md` and `CLAUDE.md`, explicitly forbidding root-level logs/artifacts.
- Moved clutter files (`test_output_full.txt`, `benchmark-after.txt`, `dashboard.log`, etc.) to `test_logs/`, `task-logs/`, and `reports/performance/`.
- Moved `INITIAL_BASELINE.md` and other baseline files to `reports/performance/`.
- Updated `src/prompts/daily/perf-agent.md` and `src/prompts/daily/const-refactor-agent.md` to reference the new location of `INITIAL_BASELINE.md`.
- Updated `.gitignore` to ignore logs and temporary artifacts in the new directories.
- Moved `DIAGNOSIS.md` to `reports/performance/`.
- Moved `perf/` data files to `reports/performance/`.

Co-authored-by: PR0M3TH3AN <[email protected]>

.gitignore

@@ -1,3 +1,27 @@
 node_modules
 dist/
 .scheduler-memory/
+
+# Logs
+*.log
+npm-debug.log*
+yarn-debug.log*
+yarn-error.log*
+
+# Test logs
+test_logs/*.log
+test_logs/*.txt
+
+# Task logs
+task-logs/*.log
+
+# Artifacts and temporary files
+artifacts/
+reports/performance/hits-*.json
+reports/performance/hits-*.txt
+reports/performance/benchmark-*.txt
+
+# Root clutter prevention
+test_output_full.txt
+benchmark-after.txt
+benchmark-baseline.txt

AGENTS.md

@@ -115,6 +115,22 @@ Its goal is “make the suite reflect reality and reject fake passes.”
 
 ---
 
+## File Organization & Cleanliness (Clean Repo Standard)
+
+Agents must keep the repository root clean. Do not create log files, temporary outputs, or artifacts in the root directory.
+
+**Standard Locations:**
+
+*   **Reports**: `reports/<category>/` (e.g., `reports/performance/`, `reports/audit/`). See [Report Location Standard](#report-location-standard).
+*   **Test Logs**: `test_logs/` (e.g., `test_logs/test_output_full.txt`).
+*   **Task Logs**: `task-logs/` (e.g., `task-logs/daily/`).
+*   **Artifacts**: `artifacts/` (for raw data, repros, or other artifacts).
+*   **General Logs**: `logs/` (if needed, otherwise `task-logs/`).
+
+**Prohibitions:**
+*   No `*.log`, `*.txt`, `*.json`, or `*.md` files in the root directory (except standard docs like `README.md`, `AGENTS.md`, `CLAUDE.md`, `KNOWN_ISSUES.md`).
+*   If a tool or script defaults to writing to root, redirect its output or configure it to write to one of the standard locations.
+
 ## Report Location Standard
 
 All agents that generate reports must adhere to the following directory structure. Reports must be placed in `reports/<category>/`.

CLAUDE.md

@@ -74,3 +74,9 @@ Prefer boundary-level service virtualization (“digital twins” / behavioral c
 * not rate-limited / not flaky
 
 (StrongDM’s “Digital Twin Universe” is the reference pattern.) ([factory.strongdm.ai][2])
+
+### Clean Repo Standard
+
+*   **No Root Clutter**: Do not create logs, artifacts, or temporary files in the repository root.
+*   **Structured Output**: Use `reports/`, `test_logs/`, `task-logs/`, or `artifacts/` as appropriate.
+*   **Redirect Output**: If a command writes to root, redirect it (e.g., `cmd > test_logs/output.txt`).

src/prompts/daily/const-refactor-agent.md

@@ -176,7 +176,7 @@ DETAILED WORKFLOW (step-by-step)
 
 9) **Follow-up**
    - Track PR reviews and address comments.
-   - When merged, update `INITIAL_BASELINE.md` or a `perf/constants-refactor/history.md` to note the canonicalization for future audits.
+   - When merged, update `reports/performance/INITIAL_BASELINE.md` or a `reports/performance/constants-refactor/history.md` to note the canonicalization for future audits.
    - If any replacement surfaced ambiguous semantics that required a behavior change, document in `src/decisions/DECISIONS_<timestamp>.md` and open an Issue for broader discussion.
 
 - If no work is required, exit without making changes.

src/prompts/daily/perf-agent.md

@@ -50,7 +50,7 @@ Commit early and often:
 - `src/todo/TODO_<timestamp>.md` — tasks (Done / Blocked).
 - `src/decisions/DECISIONS_<timestamp>.md` — design choices & rationale.
 - `src/test_logs/TEST_LOG_<timestamp>.md` — commands, env, outputs, failures.
-- `INITIAL_BASELINE.md` — baseline metrics (login time, decrypt queue size, relay latencies, webtorrent count).
+- `reports/performance/INITIAL_BASELINE.md` — baseline metrics (login time, decrypt queue size, relay latencies, webtorrent count).
 - `perf/` (optional) — scripts and small helpers.
 
 Read `AGENTS.md` and `KNOWN_ISSUES.md` before edits.
@@ -175,7 +175,7 @@ ESCALATION & RISK POLICY
 
 -------------------------------------------------------------------------------
 FIRST-RUN CHECKLIST (execute now)
-1. Commit files in `src/context/`, `src/todo/`, `src/decisions/`, `src/test_logs/`, `INITIAL_BASELINE.md`.
+- Commit files in `src/context/`, `src/todo/`, `src/decisions/`, `src/test_logs/`, `reports/performance/INITIAL_BASELINE.md`.
 2. Run Search Patterns across repo and save `reports/performance/hits-YYYY-MM-DD.json`.
 3. Prioritize P0 findings, open at most 1–3 small PRs (bounded concurrency, worker queue limits, visibility gating).
 4. Audit `/content` upload pages: inventory claims → map to code → verify → open docs PR or issue.